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I was able to build updated deb packages of libssh 0.6.5 but the problem still persists for me. I thought it would have fixed the issue as 0.6.4's changelog mentions a few ECDSA changes. Just to make sure I "ssh-keygen -R HOST_WITH_ECDSA", accessed the host via SFTP in Dolphin which worked, "ssh-keygen -R HOST_WITH_ECDSA" again, access the host via ssh (which pulled in the ECDSA key), and then accessed via Dolphin's SFTP again which failed. Any host of mine that does not use ECDSA works fine so it does seem limited to ECDSA host keys.
Note that Ed25519 keys will fail as well as that requires libssh 0.7.0.