Comment 33 for bug 204202

Actually I don't think it's really a problem but a behaviour of GNOME. To use the right keyboard shortcut in some applications (gnome-terminal, wine, ...) which are related to gnome-setting-daemon, just make sure that *that keyboard layout is the first one* in gnome-keyboard-properties. I'm a Programmer Dvorak user and this (trick) works well for me with both Programmer Dvorak and QWERTY since Karmic Koala and now Lucid Lynx (and probably Maverick Meerkat). I have to keep QWERTY layout for QWERTY users to use my keyboard as well.