We have also come across this bug as described here. I have a snapshot of our db in a state where I can consistently crash the server with a simple update statement. Please advise if I can provide more detailed information.
Things of note:
* The update works fine if I disable foreign key checks
* Forcing a recreation the foreign key seems to help get past this crash in some cases even though the foreign key itself remains the same
* Observations indicate that the length of the string used as a foreign key could be relevant, or possibly the contents of the string.
example update statement causing the crash:
mysql> update appglu_storage_files set url = concat('1', url);
ERROR 2013 (HY000): Lost connection to MySQL server during query
From error log:
130307 18:10:46 InnoDB: Assertion failure in thread 140317682054912 in file rem0rec.c line 564
InnoDB: We intentionally generate a memory trap.
InnoDB: Submit a detailed bug report to http://bugs.mysql.com.
InnoDB: If you get repeated assertion failures or crashes, even
InnoDB: immediately after the mysqld startup, there may be
InnoDB: corruption in the InnoDB tablespace. Please refer to
InnoDB: http://dev.mysql.com/doc/refman/5.5/en/forcing-innodb-recovery.html
InnoDB: about forcing recovery.
18:10:46 UTC - mysqld got signal 6 ;
This could be because you hit a bug. It is also possible that this binary
or one of the libraries it was linked against is corrupt, improperly built,
or misconfigured. This error can also be caused by malfunctioning hardware.
We will try our best to scrape up some info that will hopefully help
diagnose the problem, but since we have already crashed,
something is definitely wrong and this may fail.
Please help us make Percona Server better by reporting any
bugs at http://bugs.percona.com/
key_buffer_size=33554432
read_buffer_size=8388608
max_used_connections=5
max_threads=5000
thread_count=4
connection_count=4
It is possible that mysqld could use up to
key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 51296010 K bytes of memory
Hope that's ok; if not, decrease some variables in the equation.
Thread pointer: 0x6305bb0
Attempting backtrace. You can use the following information to find out
where mysqld died. If you see no messages after this, something went
terribly wrong...
stack_bottom = 7f9e41982e70 thread_stack 0x40000
/usr/sbin/mysqld(my_print_stacktrace+0x2e)[0x7d357e]
/usr/sbin/mysqld(handle_fatal_signal+0x484)[0x6aa084]
/lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0)[0x7f9e40ba3cb0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35)[0x7f9e4080b425]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x17b)[0x7f9e4080eb8b]
/usr/sbin/mysqld[0x815238]
/usr/sbin/mysqld(wsrep_rec_get_foreign_key+0x6c)[0x81744c]
/usr/sbin/mysqld(wsrep_append_foreign_key+0x407)[0x803907]
/usr/sbin/mysqld[0x93b18f]
/usr/sbin/mysqld[0x93ca7a]
/usr/sbin/mysqld[0x8315dc]
/usr/sbin/mysqld[0x832466]
/usr/sbin/mysqld[0x8359ce]
/usr/sbin/mysqld[0x81f1a1]
/usr/sbin/mysqld[0x804a02]
/usr/sbin/mysqld(_ZN7handler13ha_update_rowEPKhPh+0x66)[0x6b1ae6]
/usr/sbin/mysqld(_Z12mysql_updateP3THDP10TABLE_LISTR4ListI4ItemES6_PS4_jP8st_ordery15enum_duplicatesbPySB_+0x131d)[0x61f59d]
/usr/sbin/mysqld(_Z21mysql_execute_commandP3THD+0x28ca)[0x5a789a]
/usr/sbin/mysqld(_Z11mysql_parseP3THDPcjP12Parser_state+0x30c)[0x5acb0c]
/usr/sbin/mysqld[0x5ad440]
/usr/sbin/mysqld(_Z16dispatch_command19enum_server_commandP3THDPcj+0x1a80)[0x5afba0]
/usr/sbin/mysqld(_Z10do_commandP3THD+0x169)[0x5afff9]
/usr/sbin/mysqld(_Z24do_handle_one_connectionP3THD+0x157)[0x64ad57]
/usr/sbin/mysqld(handle_one_connection+0x51)[0x64af01]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a)[0x7f9e40b9be9a]
/lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f9e408c8cbd]
Trying to get some variables.
Some pointers may be invalid and cause the dump to abort.
Query (7f9dc8004f00): is an invalid pointer
Connection ID (thread ID): 75
Status: NOT_KILLED
You may download the Percona Server operations manual by visiting http://www.percona.com/software/percona-server/. You may find information
in the manual which will help you identify the cause of the crash.
130307 18:10:46 mysqld_safe Number of processes running now: 0
130307 18:10:46 mysqld_safe WSREP: not restarting wsrep node automatically
130307 18:10:46 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld-appglu.pid ended
We have also come across this bug as described here. I have a snapshot of our db in a state where I can consistently crash the server with a simple update statement. Please advise if I can provide more detailed information.
Things of note:
* The update works fine if I disable foreign key checks
* Forcing a recreation the foreign key seems to help get past this crash in some cases even though the foreign key itself remains the same
* Observations indicate that the length of the string used as a foreign key could be relevant, or possibly the contents of the string.
example update statement causing the crash: storage_ files set url = concat('1', url);
mysql> update appglu_
ERROR 2013 (HY000): Lost connection to MySQL server during query
From error log:
130307 18:10:46 InnoDB: Assertion failure in thread 140317682054912 in file rem0rec.c line 564 bugs.mysql. com. dev.mysql. com/doc/ refman/ 5.5/en/ forcing- innodb- recovery. html bugs.percona. com/
InnoDB: We intentionally generate a memory trap.
InnoDB: Submit a detailed bug report to http://
InnoDB: If you get repeated assertion failures or crashes, even
InnoDB: immediately after the mysqld startup, there may be
InnoDB: corruption in the InnoDB tablespace. Please refer to
InnoDB: http://
InnoDB: about forcing recovery.
18:10:46 UTC - mysqld got signal 6 ;
This could be because you hit a bug. It is also possible that this binary
or one of the libraries it was linked against is corrupt, improperly built,
or misconfigured. This error can also be caused by malfunctioning hardware.
We will try our best to scrape up some info that will hopefully help
diagnose the problem, but since we have already crashed,
something is definitely wrong and this may fail.
Please help us make Percona Server better by reporting any
bugs at http://
key_buffer_ size=33554432 size=8388608 connections= 5 size)*max_ threads = 51296010 K bytes of memory
read_buffer_
max_used_
max_threads=5000
thread_count=4
connection_count=4
It is possible that mysqld could use up to
key_buffer_size + (read_buffer_size + sort_buffer_
Hope that's ok; if not, decrease some variables in the equation.
Thread pointer: 0x6305bb0 mysqld( my_print_ stacktrace+ 0x2e)[0x7d357e] mysqld( handle_ fatal_signal+ 0x484)[ 0x6aa084] 64-linux- gnu/libpthread. so.0(+0xfcb0) [0x7f9e40ba3cb0 ] 64-linux- gnu/libc. so.6(gsignal+ 0x35)[0x7f9e408 0b425] 64-linux- gnu/libc. so.6(abort+ 0x17b)[ 0x7f9e4080eb8b] mysqld[ 0x815238] mysqld( wsrep_rec_ get_foreign_ key+0x6c) [0x81744c] mysqld( wsrep_append_ foreign_ key+0x407) [0x803907] mysqld[ 0x93b18f] mysqld[ 0x93ca7a] mysqld[ 0x8315dc] mysqld[ 0x832466] mysqld[ 0x8359ce] mysqld[ 0x81f1a1] mysqld[ 0x804a02] mysqld( _ZN7handler13ha _update_ rowEPKhPh+ 0x66)[0x6b1ae6] mysqld( _Z12mysql_ updateP3THDP10T ABLE_LISTR4List I4ItemES6_ PS4_jP8st_ ordery15enum_ duplicatesbPySB _+0x131d) [0x61f59d] mysqld( _Z21mysql_ execute_ commandP3THD+ 0x28ca) [0x5a789a] mysqld( _Z11mysql_ parseP3THDPcjP1 2Parser_ state+0x30c) [0x5acb0c] mysqld[ 0x5ad440] mysqld( _Z16dispatch_ command19enum_ server_ commandP3THDPcj +0x1a80) [0x5afba0] mysqld( _Z10do_ commandP3THD+ 0x169)[ 0x5afff9] mysqld( _Z24do_ handle_ one_connectionP 3THD+0x157) [0x64ad57] mysqld( handle_ one_connection+ 0x51)[0x64af01] 64-linux- gnu/libpthread. so.0(+0x7e9a) [0x7f9e40b9be9a ] 64-linux- gnu/libc. so.6(clone+ 0x6d)[0x7f9e408 c8cbd]
Attempting backtrace. You can use the following information to find out
where mysqld died. If you see no messages after this, something went
terribly wrong...
stack_bottom = 7f9e41982e70 thread_stack 0x40000
/usr/sbin/
/usr/sbin/
/lib/x86_
/lib/x86_
/lib/x86_
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/usr/sbin/
/lib/x86_
/lib/x86_
Trying to get some variables.
Some pointers may be invalid and cause the dump to abort.
Query (7f9dc8004f00): is an invalid pointer
Connection ID (thread ID): 75
Status: NOT_KILLED
You may download the Percona Server operations manual by visiting www.percona. com/software/ percona- server/. You may find information mysqld/ mysqld- appglu. pid ended
http://
in the manual which will help you identify the cause of the crash.
130307 18:10:46 mysqld_safe Number of processes running now: 0
130307 18:10:46 mysqld_safe WSREP: not restarting wsrep node automatically
130307 18:10:46 mysqld_safe mysqld from pid file /var/run/