Comment 6 for bug 1111397

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Dmitry Shachnev (mitya57) wrote : Re: Executable files do not launch in 13.04

This was an intentional change done by upstream Nautilus developers. Showing a dialog by default makes problems for users that have external drives with FAT32-like filesystem, where all files are executable. See:

https://git.gnome.org/browse/nautilus/commit/?id=72d6c7ce7febd573
https://bugzilla.gnome.org/show_bug.cgi?id=601736

Like Borivoje said, it is easily configurable from the Preferences dialog.