ncbi-blast+ 2.9.0-2 source package in Ubuntu

Changelog

ncbi-blast+ (2.9.0-2) unstable; urgency=medium

  * debian/control: Standards-Version: 4.4.1 (already compliant).
  * debian/copyright: Remove redundant ncbi_menu_*.js stanza.
  * debian/rules:
    - Delegate dpkg-{architecture,buildflags} calls to
      /usr/share/dpkg/{architecture,buildflags}.mk respectively.
    - Allow for cross-building (Closes: #930240):
    -- Factor a DEB_CONFIGURE_COMMON_FLAGS macro out of
       DEB_CONFIGURE_EXTRA_FLAGS for flags that also make sense for native
       builds of internal helpers.
    -- Conditionally supply --build=... and --host= to the main
       (historically, only) configure run per Helmut Grohne's suggestion.
       (dh_auto_configure would take care of this, but insists on passing
       a --runstatedir=... flag this configure script doesn't accept.)
    -- Conditionally add a rule for building native datatool and
       project_tree_builder binaries (in a parallel build tree established
       via another configure invocation), make it a dependency of
       override_dh_auto_configure-arch, and arrange for everything else to
       use these binaries as needed.
    -- Honor DEB_BUILD_OPTIONS="... nocheck ...", also per Helmut.
    -- Rework logic to install (possibly indirect) local library
       dependencies to use readelf rather than ldd, making as many passes
       as necessary (four at present, but no hardcoded count).
    - Install get_species_taxids without the .sh suffix.

 -- Aaron M. Ucko <email address hidden>  Sun, 29 Sep 2019 21:57:31 -0400

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Focal release universe science

Downloads

File Size SHA-256 Checksum
ncbi-blast+_2.9.0-2.dsc 2.3 KiB efe308800c38f1ee033681cd33dc3a4ebed2185eb0cf3819ca3cdcea7a1249f3
ncbi-blast+_2.9.0.orig.tar.gz 24.7 MiB eb63d2557a46550254e9d0fc06caaaf7bfbda16320c49012d0619cc75a68fbc8
ncbi-blast+_2.9.0-2.debian.tar.xz 30.3 KiB 97883b7039f2fdafc454ae062394695b5c547b037f57f843089682c394560d46

Available diffs

No changes file available.

Binary packages built by this source

blast2: transitional dummy package to ncbi-blast+-legacy

 This is a transitional dummy package for ncbi-blast+-legacy.
 It can safely be removed.

ncbi-blast+: next generation suite of BLAST sequence search tools

 The Basic Local Alignment Search Tool (BLAST) is the most widely
 used sequence similarity tool. There are versions of BLAST that
 compare protein queries to protein databases, nucleotide queries
 to nucleotide databases, as well as versions that translate nucleotide
 queries or databases in all six frames and compare to protein databases
 or queries.
 PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting
 with a protein query, and then uses that PSSM to perform further searches.
 It is also possible to compare a protein or nucleotide query to a
 database of PSSM’s.
 The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as
 a network service.

ncbi-blast+-dbgsym: debug symbols for ncbi-blast+
ncbi-blast+-legacy: NCBI Blast legacy call script

 This package adds some fake scripts to call NCBI+ programs
 with the NCBI blast command line. It makes use of the
 legacy_blast script in ncbi-blast+ package.