ncbi-blast+ 2.9.0-2 source package in Ubuntu
Changelog
ncbi-blast+ (2.9.0-2) unstable; urgency=medium * debian/control: Standards-Version: 4.4.1 (already compliant). * debian/copyright: Remove redundant ncbi_menu_*.js stanza. * debian/rules: - Delegate dpkg-{architecture,buildflags} calls to /usr/share/dpkg/{architecture,buildflags}.mk respectively. - Allow for cross-building (Closes: #930240): -- Factor a DEB_CONFIGURE_COMMON_FLAGS macro out of DEB_CONFIGURE_EXTRA_FLAGS for flags that also make sense for native builds of internal helpers. -- Conditionally supply --build=... and --host= to the main (historically, only) configure run per Helmut Grohne's suggestion. (dh_auto_configure would take care of this, but insists on passing a --runstatedir=... flag this configure script doesn't accept.) -- Conditionally add a rule for building native datatool and project_tree_builder binaries (in a parallel build tree established via another configure invocation), make it a dependency of override_dh_auto_configure-arch, and arrange for everything else to use these binaries as needed. -- Honor DEB_BUILD_OPTIONS="... nocheck ...", also per Helmut. -- Rework logic to install (possibly indirect) local library dependencies to use readelf rather than ldd, making as many passes as necessary (four at present, but no hardcoded count). - Install get_species_taxids without the .sh suffix. -- Aaron M. Ucko <email address hidden> Sun, 29 Sep 2019 21:57:31 -0400
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Focal | release | universe | science |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
ncbi-blast+_2.9.0-2.dsc | 2.3 KiB | efe308800c38f1ee033681cd33dc3a4ebed2185eb0cf3819ca3cdcea7a1249f3 |
ncbi-blast+_2.9.0.orig.tar.gz | 24.7 MiB | eb63d2557a46550254e9d0fc06caaaf7bfbda16320c49012d0619cc75a68fbc8 |
ncbi-blast+_2.9.0-2.debian.tar.xz | 30.3 KiB | 97883b7039f2fdafc454ae062394695b5c547b037f57f843089682c394560d46 |
Available diffs
- diff from 2.8.1-1 to 2.9.0-2 (768.0 KiB)
No changes file available.
Binary packages built by this source
- blast2: transitional dummy package to ncbi-blast+-legacy
This is a transitional dummy package for ncbi-blast+-legacy.
It can safely be removed.
- ncbi-blast+: next generation suite of BLAST sequence search tools
The Basic Local Alignment Search Tool (BLAST) is the most widely
used sequence similarity tool. There are versions of BLAST that
compare protein queries to protein databases, nucleotide queries
to nucleotide databases, as well as versions that translate nucleotide
queries or databases in all six frames and compare to protein databases
or queries.
PSI-BLAST produces a position-specific- scoring- matrix (PSSM) starting
with a protein query, and then uses that PSSM to perform further searches.
It is also possible to compare a protein or nucleotide query to a
database of PSSM’s.
The NCBI supports a BLAST web page at blast.ncbi.nlm.nih. gov as well as
a network service.
- ncbi-blast+-dbgsym: debug symbols for ncbi-blast+
- ncbi-blast+-legacy: NCBI Blast legacy call script
This package adds some fake scripts to call NCBI+ programs
with the NCBI blast command line. It makes use of the
legacy_blast script in ncbi-blast+ package.