libseqlib 1.2.0+dfsg-10 source package in Ubuntu
Changelog
libseqlib (1.2.0+dfsg-10) unstable; urgency=medium
* d/libseqlib2.symbols.amd64: update.
Mark symbols optimized out by LTO as optional. This has the side
effect of resolving build failures with Gcc 13. (Closes: #1015520, #1037739)
* d/control: declare compliance to standards version 4.6.2.
-- Étienne Mollier <email address hidden> Tue, 18 Jul 2023 15:56:08 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Mantic | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| libseqlib_1.2.0+dfsg-10.dsc | 2.3 KiB | e67b09bbe4fad1cfe589eb8fc13dd78ec70d0f4f79c48c63d878cd88075f7e62 |
| libseqlib_1.2.0+dfsg.orig.tar.xz | 145.5 KiB | 408ee92e5041ff45d9d259d1507ef783e74c565d02e0c623ef0a67a7c387b953 |
| libseqlib_1.2.0+dfsg-10.debian.tar.xz | 15.0 KiB | 8cfea0609affd3f509ce28729d965da819ef85a005ac4426225265fb086b9c31 |
Available diffs
- diff from 1.2.0+dfsg-9 to 1.2.0+dfsg-10 (5.6 KiB)
No changes file available.
Binary packages built by this source
- libseqlib-dev: C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
.
This package contains the header files and static library.
- libseqlib2: C++ htslib/bwa-mem/fermi interface for interrogating sequence data
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
- libseqlib2-dbgsym: debug symbols for libseqlib2
