Ubuntu
libfastahack package

libfastahack 0.0+git20160702.bbc645f+dfsg-6 source package in Ubuntu

Changelog

libfastahack (0.0+git20160702.bbc645f+dfsg-6) unstable; urgency=medium

  * Set some symbols optional to make build more robust
    Closes: #915271
  * Secure URI in copyright format

 -- Andreas Tille <email address hidden>  Sun, 02 Dec 2018 16:32:55 +0100

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
libfastahack_0.0+git20160702.bbc645f+dfsg-6.dsc 2.2 KiB 11efbd82d1fa0bef01ac0a619b3ad6f8e834acb43f3af388ecc8820afe6492d4
libfastahack_0.0+git20160702.bbc645f+dfsg.orig.tar.xz 8.5 KiB cb2b98d555c502adbf080ecad2ec04c0230d30d6552a16761db281c5635ece15
libfastahack_0.0+git20160702.bbc645f+dfsg-6.debian.tar.xz 6.1 KiB 39726ac10efd0ef9a95ebaf5e310327e2a17cb287a275949a38abe0e1787a9c9

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Binary packages built by this source

fastahack: utility for indexing and sequence extraction from FASTA files

 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files. The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations. This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.

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