Ubuntu
ivar package

ivar 1.3.1+dfsg-5 source package in Ubuntu

Changelog

ivar (1.3.1+dfsg-5) unstable; urgency=medium

  * Add gcc-12.patch: fix ftbfs with gcc-12. (Closes: #1012952)
  * Standards-Version: 4.6.1 (routine-update)
  * d/s/lintian-overrides: update to new lintian semantics.

 -- Étienne Mollier <email address hidden>  Tue, 12 Jul 2022 23:11:44 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Kinetic release universe misc

Downloads

File Size SHA-256 Checksum
ivar_1.3.1+dfsg-5.dsc 2.2 KiB cad449841d1333dc5b8fff0dab06291b203c06ef8b6c1c76a4f65b0b837c24d6
ivar_1.3.1+dfsg.orig.tar.xz 615.6 KiB 1c506993b93b2f6b2fec7328e726bfb91a99a9d36c4b9e0bb174383143a2b192
ivar_1.3.1+dfsg-5.debian.tar.xz 44.8 KiB 2ed2fb6a470874428a478be6c817cce3fecb2a78665e3b577037398407272a96

Available diffs

No changes file available.

Binary packages built by this source

ivar: functions broadly useful for viral amplicon-based sequencing

 iVar is a computational package that contains functions broadly useful
 for viral amplicon-based sequencing. Additional tools for metagenomic
 sequencing are actively being incorporated into iVar. While each of
 these functions can be accomplished using existing tools, iVar contains
 an intersection of functionality from multiple tools that are required
 to call iSNVs and consensus sequences from viral sequencing data across
 multiple replicates. iVar provided the following functions:
 .
  1. trimming of primers and low-quality bases,
  2. consensus calling,
  3. variant calling - both iSNVs and insertions/deletions, and
  4. identifying mismatches to primer sequences and excluding the
     corresponding reads from alignment files.

ivar-dbgsym: debug symbols for ivar
ivar-doc: functions broadly useful for viral amplicon-based sequencing (documentation)

 iVar is a computational package that contains functions broadly useful
 for viral amplicon-based sequencing. Additional tools for metagenomic
 sequencing are actively being incorporated into iVar. While each of
 these functions can be accomplished using existing tools, iVar contains
 an intersection of functionality from multiple tools that are required
 to call iSNVs and consensus sequences from viral sequencing data across
 multiple replicates. iVar provided the following functions:
 .
  1. trimming of primers and low-quality bases,
  2. consensus calling,
  3. variant calling - both iSNVs and insertions/deletions, and
  4. identifying mismatches to primer sequences and excluding the
     corresponding reads from alignment files.
 .
 This package contains the html documentation for ivar.