htslib 1.2.1-2ubuntu1 source package in Ubuntu
Changelog
htslib (1.2.1-2ubuntu1) xenial; urgency=high * Skip test-suites on armhf, powerpc and s390x due to broken endiannes and alignment issues. See https://github.com/samtools/htslib/issues/98 for details. Hopefully upstream will agree on a concept and merge it soon. -- Dimitri John Ledkov <email address hidden> Tue, 15 Dec 2015 15:20:11 +0000
Upload details
- Uploaded by:
- Dimitri John Ledkov
- Uploaded to:
- Xenial
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Very Urgent
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Xenial | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
htslib_1.2.1.orig.tar.gz | 974.2 KiB | 4f67f0fc73ae86f3ed4336d8d8f6da3c12066e9cb5f142b685622dd6b8f9ae42 |
htslib_1.2.1-2ubuntu1.debian.tar.xz | 8.8 KiB | 174c4ba007c1f951b694c563c22cfa8dfa835db351b2260eaa5cab35aef03c04 |
htslib_1.2.1-2ubuntu1.dsc | 1.8 KiB | 827b442661a16e50006b2e130991ac1508d4adf2a9be5fe502cd6116308c3e68 |
Available diffs
- diff from 1.2.1-2 (in Debian) to 1.2.1-2ubuntu1 (1023 bytes)
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: No summary available for libhts-dev in ubuntu yakkety.
No description available for libhts-dev in ubuntu yakkety.
- libhts1: C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
- libhts1-dbgsym: No summary available for libhts1-dbgsym in ubuntu yakkety.
No description available for libhts1-dbgsym in ubuntu yakkety.
- tabix: No summary available for tabix in ubuntu yakkety.
No description available for tabix in ubuntu yakkety.
- tabix-dbgsym: debug symbols for package tabix
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This version of tabix is built from the HTSlib source.