Ubuntu
htslib package

htslib 1.17+ds-1 source package in Ubuntu

Changelog

htslib (1.17+ds-1) unstable; urgency=medium

  * Migrate htslib to unstable.
  * d/control: declare libhts3 breaks samtools < 1.17.

 -- Étienne Mollier <email address hidden>  Thu, 22 Jun 2023 22:21:42 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc

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File Size SHA-256 Checksum
htslib_1.17+ds-1.dsc 2.4 KiB 69ba98f1dc9345534e630b3649fac9d465c94159365b227b66cad203d4f77446
htslib_1.17+ds.orig.tar.bz2 1.3 MiB c311f509959d83eec02124e190f52378ecce6ebeb4e31fed9bb5859a263130ea
htslib_1.17+ds-1.debian.tar.xz 19.8 KiB 956f59030b75c008c54689968900c45b7567207c67fd4fda725fed88267d1835

Available diffs

No changes file available.

Binary packages built by this source

htslib-test: Test data for HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains test files and scripts for the HTSlib.

libhts-dev: development files for the HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains development files for the HTSlib: headers, static
 library, manual pages, etc.
 .
 For compatibility with sambamba, the internal routine cram_to_bam was
 exported, hereto adopting a patch found in guix.

libhts3: C library for high-throughput sequencing data formats

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.

libhts3-dbgsym: debug symbols for libhts3
tabix: generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This package is built from the HTSlib source, and provides the bgzip, htsfile,
 and tabix tools.

tabix-dbgsym: debug symbols for tabix