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htslib package

htslib 1.13+ds-2build2 source package in Ubuntu

Changelog

htslib (1.13+ds-2build2) kinetic; urgency=medium

  * No-change rebuild to pickup a newer LTO.

 -- Brian Murray <email address hidden>  Fri, 13 May 2022 13:22:01 -0700

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Uploaded by:
Brian Murray
Uploaded to:
Kinetic
Original maintainer:
Ubuntu Developers
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Kinetic release universe misc

Downloads

File Size SHA-256 Checksum
htslib_1.13+ds.orig.tar.bz2 1.3 MiB dfbad417019169ef28eb3f34f232ece2a3be1442e09f4c968671667e9b2f6ab9
htslib_1.13+ds-2build2.debian.tar.xz 17.2 KiB 867c358e6f8e28a029d0c59799b8e175754947f850c9f30e78e01f223eac5e7b
htslib_1.13+ds-2build2.dsc 2.5 KiB 315d69c3e975f422fde614b3c4f0c4ce409b802ce18bbdc04d966f99c459d631

Available diffs

View changes file

Binary packages built by this source

htslib-test: Test data for HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains test files and scripts for the HTSlib.

libhts-dev: development files for the HTSlib

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.
 .
 This package contains development files for the HTSlib: headers, static
 library, manual pages, etc.
 .
 For compatibility with sambamba, the internal routine cram_to_bam was
 exported, hereto adopting a patch found in guix.

libhts3: C library for high-throughput sequencing data formats

 HTSlib is an implementation of a unified C library for accessing common file
 formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
 Format), used for high-throughput sequencing data, and is the core library
 used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
 compatible with gcc, g++ and clang.
 .
 HTSlib implements a generalized BAM (binary SAM) index, with file extension
 ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
 new index and then for the old if the new index is absent.

libhts3-dbgsym: debug symbols for libhts3
tabix: generic indexer for TAB-delimited genome position files

 Tabix indexes files where some columns indicate sequence coordinates: name
 (usually a chromosome), start and stop. The input data file must be position
 sorted and compressed by bgzip (provided in this package), which has a gzip
 like interface. After indexing, tabix is able to quickly retrieve data lines by
 chromosomal coordinates. Fast data retrieval also works over network if an URI
 is given as a file name.
 .
 This package is built from the HTSlib source, and provides the bgzip, htsfile,
 and tabix tools.

tabix-dbgsym: debug symbols for tabix