MySQL Sandbox

mysql_install_db Error in my_thread_global_end(): 1 threads didn't exit

Bug #1402074 reported by Giuseppe Maxia
18
This bug affects 3 people
Affects Status Importance Assigned to Milestone
MySQL Sandbox
Confirmed
Critical
Unassigned
Percona Server moved to https://jira.percona.com/projects/PS
Invalid
Undecided
Unassigned
5.5
Fix Released
High
Sergei Glushchenko
Percona Server moved to https://jira.percona.com/projects/PS 5.5.43-37.2
5.6
Invalid
Undecided
Unassigned
Percona XtraDB Cluster moved to https://jira.percona.com/projects/PXC
Fix Committed
High
Unassigned

Bug Description

I have tried installing from a .tar.gz using Percona Server 5.5.36 and later. The installation using mysql_install_db always fails with the following message

$HOME/downloads/5.5.36/scripts/mysql_install_db --no-defaults --user=$USER --basedir=$HOME/downloads/5.5.36 --datadir=$HOME/sandboxes/msb_5_5_36/data
error while creating grant tables
Installing MySQL system tables...
Error in my_thread_global_end(): 1 threads didn't exit
OK
Filling help tables...
Error in my_thread_global_end(): 1 threads didn't exit
OK

Notice that:
1) versions prior to 5.5.36 install just fine
2) all versions after 5.5.36 fail with the same error
3) Version 5.6 is not affected

This may be related to Bug+1190774

Tags: i51967
Revision history for this message
Raghavendra D Prabhu (raghavendra-prabhu) wrote :

@Giuseppe,

Moving this to PS component as per the title.

affects: percona-xtradb-cluster → percona-server
Revision history for this message
Giuseppe Maxia (giuseppe-maxia) wrote :

Note: the issue is independent from the operating system. Compiling the source on OSX ( using CMake defaults) results in the same problem.

Revision history for this message
Sergei Glushchenko (sergei.glushchenko) wrote :

mysql_install_db still completed successfully and database installed. Lets keep this report to investigate and fix the reason for this message:

Error in my_thread_global_end(): 1 threads didn't exit

I see this error message in Percona Server 5.5, but not in Percona Server 5.6. However I see it in Percona Xtradb Cluster:

http://jenkins.percona.com/view/PXB%202.2/job/percona-xtrabackup-2.2-param/BUILD_TYPE=release,Host=centos5-64,xtrabackuptarget=galera56/267/testReport/junit/(root)/t_xb_galera_sst/sh/

summary: - installation with tar.gz fails with PS-5.5.36+
+ mysql_install_db Error in my_thread_global_end(): 1 threads didn't exit
Changed in percona-server:
status: New → Confirmed
Changed in percona-xtradb-cluster:
status: New → Confirmed
Revision history for this message
Giuseppe Maxia (giuseppe-maxia) wrote :

Please notice:
* The corresponding packages MySQL 5.5.40 and MariaDB 5.5.40 both install without problem.
* Even if the installation completes, the error message makes the operation fail, and thus this bug affects anyone using scripts to install from a tarball
* Specifically, this bugs blocks MySQL Sandbox from operating correctly with Percona Server 5.5.

Changed in mysql-sandbox:
status: New → Confirmed
importance: Undecided → Critical
Revision history for this message
Jervin R (revin) wrote :

A workaround is to start the sandbox and execute load_grants for now. This is a showstopper for automated tests.

Valerii Kravchuk (valerii-kravchuk)
tags: added: i51967
Revision history for this message
Sergei Glushchenko (sergei.glushchenko) wrote :

Yet another regression introduced by backporting for bug 1319904.
This patch fixes the issue.

diff --git a/sql/mysqld.cc b/sql/mysqld.cc
index 6729bfc..c89fc6d 100644
--- a/sql/mysqld.cc
+++ b/sql/mysqld.cc
@@ -4857,6 +4857,11 @@ int mysqld_main(int argc, char **argv)
   if (opt_bootstrap)
   {
     select_thread_in_use= 0; // Allow 'kill' to work
+ /* Signal threads waiting for server to be started */
+ mysql_mutex_lock(&LOCK_server_started);
+ mysqld_server_started= 1;
+ mysql_cond_broadcast(&COND_server_started);
+ mysql_mutex_unlock(&LOCK_server_started);
     bootstrap(mysql_stdin);
     unireg_abort(bootstrap_error ? 1 : 0);
   }

Revision history for this message
Sergei Glushchenko (sergei.glushchenko) wrote :

fixed here: https://github.com/percona/percona-server/pull/45

Krunal Bauskar (krunal-bauskar)
Changed in percona-xtradb-cluster:
status: Confirmed → Fix Committed
importance: Undecided → High
Revision history for this message
Shahriyar Rzayev (rzayev-sehriyar) wrote :

Percona now uses JIRA for bug reports so this bug report is migrated to: https://jira.percona.com/browse/PXC-1021

Revision history for this message
Shahriyar Rzayev (rzayev-sehriyar) wrote :

Percona now uses JIRA for bug reports so this bug report is migrated to: https://jira.percona.com/browse/PS-3244

To post a comment you must log in.
This report contains Public information  
Everyone can see this information.

Duplicates of this bug

Subscribing...

Other bug subscribers

Remote bug watches

Bug watches keep track of this bug in other bug trackers.