Instant

instant cmake build does not allow custom extension module with include_dirs, libraries etc...

Bug #1134634 reported by Chaffra Affouda
10
This bug affects 2 people
Affects Status Importance Assigned to Milestone
Instant
Fix Released
Medium
Kent-Andre Mardal
Instant 1.2.0

Bug Description

See Dolfin Question #222899

I used to be able to feed instant.build.build_module with the include_dirs variable to look for headers in a non-default location. After merging with the trunk version of instant this no longer works.

See below, instant is missing an extra -I flag for my added include_dirs

/usr/bin/c++ -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC -I/usr/local/include -I/usr/include/python2.7 -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b -o CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o -c /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25: fatal error: fermi_dirac.h: No such file or directory
compilation terminated.

Revision history for this message
Kent-Andre Mardal (kent-and) wrote : Re: [Bug 1134634] [NEW] instant cmake build does not allow custom extension module with include_dirs, libraries etc...

Right, instant is now only using the dolfin cmake configuration file and
ignores the other stuff. We should add back
include_dirs etc. I will try to look at this tomorrow.

Kent

On 27 February 2013 19:19, Chaffra Affouda <email address hidden>wrote:

> Public bug reported:
>
> See Dolfin Question #222899
>
> I used to be able to feed instant.build.build_module with the
> include_dirs variable to look for headers in a non-default location.
> After merging with the trunk version of instant this no longer works.
>
> See below, instant is missing an extra -I flag for my added include_dirs
>
> /usr/bin/c++
> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
> -I/usr/local/include -I/usr/include/python2.7
> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
> -o
> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
> -c
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
> fatal error: fermi_dirac.h: No such file or directory
> compilation terminated.
>
> ** Affects: instant
> Importance: Undecided
> Status: New
>
> --
> You received this bug notification because you are a member of Instant
> Core Team, which is subscribed to Instant.
> https://bugs.launchpad.net/bugs/1134634
>
> Title:
> instant cmake build does not allow custom extension module with
> include_dirs, libraries etc...
>
> Status in Instant:
> New
>
> Bug description:
> See Dolfin Question #222899
>
> I used to be able to feed instant.build.build_module with the
> include_dirs variable to look for headers in a non-default location.
> After merging with the trunk version of instant this no longer works.
>
> See below, instant is missing an extra -I flag for my added
> include_dirs
>
> /usr/bin/c++
> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
> -I/usr/local/include -I/usr/include/python2.7
> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
> -o
> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
> -c
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
>
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
> fatal error: fermi_dirac.h: No such file or directory
> compilation terminated.
>
> To manage notifications about this bug go to:
> https://bugs.launchpad.net/instant/+bug/1134634/+subscriptions
>

Revision history for this message
Kent-Andre Mardal (kent-and) wrote :

Could you check:
lp:~kent-and/instant/cmake-includedirs<https://code.launchpad.net/%7Ekent-and/instant/cmake-includedirs>

Kent

On 27 February 2013 19:19, Chaffra Affouda <email address hidden>wrote:

> Public bug reported:
>
> See Dolfin Question #222899
>
> I used to be able to feed instant.build.build_module with the
> include_dirs variable to look for headers in a non-default location.
> After merging with the trunk version of instant this no longer works.
>
> See below, instant is missing an extra -I flag for my added include_dirs
>
> /usr/bin/c++
> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
> -I/usr/local/include -I/usr/include/python2.7
> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
> -o
> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
> -c
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
> fatal error: fermi_dirac.h: No such file or directory
> compilation terminated.
>
> ** Affects: instant
> Importance: Undecided
> Status: New
>
> --
> You received this bug notification because you are a member of Instant
> Core Team, which is subscribed to Instant.
> https://bugs.launchpad.net/bugs/1134634
>
> Title:
> instant cmake build does not allow custom extension module with
> include_dirs, libraries etc...
>
> Status in Instant:
> New
>
> Bug description:
> See Dolfin Question #222899
>
> I used to be able to feed instant.build.build_module with the
> include_dirs variable to look for headers in a non-default location.
> After merging with the trunk version of instant this no longer works.
>
> See below, instant is missing an extra -I flag for my added
> include_dirs
>
> /usr/bin/c++
> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
> -I/usr/local/include -I/usr/include/python2.7
> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
> -o
> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
> -c
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
>
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
> fatal error: fermi_dirac.h: No such file or directory
> compilation terminated.
>
> To manage notifications about this bug go to:
> https://bugs.launchpad.net/instant/+bug/1134634/+subscriptions
>

Revision history for this message
Kent-Andre Mardal (kent-and) wrote :
Download full text (3.2 KiB)

 Chaffra Affouda, did this fix work for you ?

Kent

On 28 February 2013 15:51, Kent-Andre Mardal <email address hidden> wrote:

> Could you check:
> lp:~kent-and/instant/cmake-includedirs<https://code.launchpad.net/%7Ekent-and/instant/cmake-includedirs>
>
> Kent
>
> On 27 February 2013 19:19, Chaffra Affouda <email address hidden>wrote:
>
>> Public bug reported:
>>
>> See Dolfin Question #222899
>>
>> I used to be able to feed instant.build.build_module with the
>> include_dirs variable to look for headers in a non-default location.
>> After merging with the trunk version of instant this no longer works.
>>
>> See below, instant is missing an extra -I flag for my added include_dirs
>>
>> /usr/bin/c++
>> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
>> -I/usr/local/include -I/usr/include/python2.7
>> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
>> -o
>> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
>> -c
>> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
>> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
>> fatal error: fermi_dirac.h: No such file or directory
>> compilation terminated.
>>
>> ** Affects: instant
>> Importance: Undecided
>> Status: New
>>
>> --
>> You received this bug notification because you are a member of Instant
>> Core Team, which is subscribed to Instant.
>> https://bugs.launchpad.net/bugs/1134634
>>
>> Title:
>> instant cmake build does not allow custom extension module with
>> include_dirs, libraries etc...
>>
>> Status in Instant:
>> New
>>
>> Bug description:
>> See Dolfin Question #222899
>>
>> I used to be able to feed instant.build.build_module with the
>> include_dirs variable to look for headers in a non-default location.
>> After merging with the trunk version of instant this no longer works.
>>
>> See below, instant is missing an extra -I flag for my added
>> include_dirs
>>
>> /usr/bin/c++
>> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
>> -I/usr/local/include -I/usr/include/python2.7
>> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
>> -o
>> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
>> -c
>> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
>>
>> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
>> fatal error: fermi_dirac.h: No such file or directory
>> compilation terminated.
>>
>> To manage notifications about this bug go to:
>> https://bug...

Read more...

Revision history for this message
Chaffra Affouda (chaffra) wrote :

compile.log says

CMake Error at CMakeLists.txt:11 (INCLUDE):
  include called with wrong number of arguments. Include only takes one
  file.

-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found SWIG: /usr/bin/swig2.0 (found version "2.0.4")
-- Configuring incomplete, errors occurred!

Revision history for this message
Kent-Andre Mardal (kent-and) wrote : Re: [Bug 1134634] Re: instant cmake build does not allow custom extension module with include_dirs, libraries etc...

Can you attach the CMakeList.txt file?

(BTW sorry about the huge font in the previous mail - I didn't try
to make a point)

Kent

On 4 March 2013 14:40, Chaffra Affouda <email address hidden> wrote:

> compile.log says
>
> CMake Error at CMakeLists.txt:11 (INCLUDE):
> include called with wrong number of arguments. Include only takes one
> file.
>
>
> -- The C compiler identification is GNU
> -- The CXX compiler identification is GNU
> -- Check for working C compiler: /usr/bin/gcc
> -- Check for working C compiler: /usr/bin/gcc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Found SWIG: /usr/bin/swig2.0 (found version "2.0.4")
> -- Configuring incomplete, errors occurred!
>
> --
> You received this bug notification because you are a member of Instant
> Core Team, which is subscribed to Instant.
> https://bugs.launchpad.net/bugs/1134634
>
> Title:
> instant cmake build does not allow custom extension module with
> include_dirs, libraries etc...
>
> Status in Instant:
> New
>
> Bug description:
> See Dolfin Question #222899
>
> I used to be able to feed instant.build.build_module with the
> include_dirs variable to look for headers in a non-default location.
> After merging with the trunk version of instant this no longer works.
>
> See below, instant is missing an extra -I flag for my added
> include_dirs
>
> /usr/bin/c++
> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
> -I/usr/local/include -I/usr/include/python2.7
> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
> -o
> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
> -c
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
>
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
> fatal error: fermi_dirac.h: No such file or directory
> compilation terminated.
>
> To manage notifications about this bug go to:
> https://bugs.launchpad.net/instant/+bug/1134634/+subscriptions
>

Revision history for this message
Chaffra Affouda (chaffra) wrote :

Here it is.
On 03/04/2013 09:53 AM, Kent-Andre Mardal wrote:
> Can you attach the CMakeList.txt file?
>
> (BTW sorry about the huge font in the previous mail - I didn't try
> to make a point)
>
> Kent
>
> On 4 March 2013 14:40, Chaffra Affouda <email address hidden>
> wrote:
>
>> compile.log says
>>
>> CMake Error at CMakeLists.txt:11 (INCLUDE):
>> include called with wrong number of arguments. Include only takes one
>> file.
>>
>>
>> -- The C compiler identification is GNU
>> -- The CXX compiler identification is GNU
>> -- Check for working C compiler: /usr/bin/gcc
>> -- Check for working C compiler: /usr/bin/gcc -- works
>> -- Detecting C compiler ABI info
>> -- Detecting C compiler ABI info - done
>> -- Check for working CXX compiler: /usr/bin/c++
>> -- Check for working CXX compiler: /usr/bin/c++ -- works
>> -- Detecting CXX compiler ABI info
>> -- Detecting CXX compiler ABI info - done
>> -- Found SWIG: /usr/bin/swig2.0 (found version "2.0.4")
>> -- Configuring incomplete, errors occurred!
>>
>> --
>> You received this bug notification because you are a member of Instant
>> Core Team, which is subscribed to Instant.
>> https://bugs.launchpad.net/bugs/1134634
>>
>> Title:
>> instant cmake build does not allow custom extension module with
>> include_dirs, libraries etc...
>>
>> Status in Instant:
>> New
>>
>> Bug description:
>> See Dolfin Question #222899
>>
>> I used to be able to feed instant.build.build_module with the
>> include_dirs variable to look for headers in a non-default location.
>> After merging with the trunk version of instant this no longer works.
>>
>> See below, instant is missing an extra -I flag for my added
>> include_dirs
>>
>> /usr/bin/c++
>> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
>> -I/usr/local/include -I/usr/include/python2.7
>> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
>> -o
>> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
>> -c
>> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
>>
>> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
>> fatal error: fermi_dirac.h: No such file or directory
>> compilation terminated.
>>
>> To manage notifications about this bug go to:
>> https://bugs.launchpad.net/instant/+bug/1134634/+subscriptions
>>

Revision history for this message
Johannes Ring (johannr) wrote :

It seems like this line is failing:

  INCLUDE(${UFC_USE_FILE})

The only reason I can see that this will fail is if you have an old version of UFC, from before we added the UFC_USE_FILE.

Revision history for this message
Johannes Ring (johannr) wrote :

@Chaffra: Do have a recent version of UFC from the development branch?

Changed in instant:
milestone: none → 1.2.0
assignee: nobody → Kent-Andre Mardal (kent-and)
status: New → In Progress
importance: Undecided → Medium
Revision history for this message
Chaffra Affouda (chaffra) wrote :

On 03/06/2013 07:21 AM, Johannes Ring wrote:
> @Chaffra: Do have a recent version of UFC from the development branch?
>
> ** Changed in: instant
> Milestone: None => 1.2.0
>
> ** Changed in: instant
> Assignee: (unassigned) => Kent-Andre Mardal (kent-and)
>
> ** Changed in: instant
> Status: New => In Progress
>
> ** Changed in: instant
> Importance: Undecided => Medium
>
 I do. But it still did not work. By upgrading ufc I also had to upgrade
ffc and others... I'll make sure I am not missing anything because my
programs no longer converge. But as fas as I know it did not work. When
I get up and running today I'll send out my compile.log.

Revision history for this message
Kent-Andre Mardal (kent-and) wrote :

Instant has now been updated so that you can send in additional files. See:
the brach:
lp:~kent-and/instant/cmake-includedirs<https://code.launchpad.net/%7Ekent-and/instant/cmake-includedirs>

Kent

On 6 March 2013 15:53, Chaffra Affouda <email address hidden> wrote:

> On 03/06/2013 07:21 AM, Johannes Ring wrote:
> > @Chaffra: Do have a recent version of UFC from the development branch?
> >
> > ** Changed in: instant
> > Milestone: None => 1.2.0
> >
> > ** Changed in: instant
> > Assignee: (unassigned) => Kent-Andre Mardal (kent-and)
> >
> > ** Changed in: instant
> > Status: New => In Progress
> >
> > ** Changed in: instant
> > Importance: Undecided => Medium
> >
> I do. But it still did not work. By upgrading ufc I also had to upgrade
> ffc and others... I'll make sure I am not missing anything because my
> programs no longer converge. But as fas as I know it did not work. When
> I get up and running today I'll send out my compile.log.
>
> --
> You received this bug notification because you are a member of Instant
> Core Team, which is subscribed to Instant.
> https://bugs.launchpad.net/bugs/1134634
>
> Title:
> instant cmake build does not allow custom extension module with
> include_dirs, libraries etc...
>
> Status in Instant:
> In Progress
>
> Bug description:
> See Dolfin Question #222899
>
> I used to be able to feed instant.build.build_module with the
> include_dirs variable to look for headers in a non-default location.
> After merging with the trunk version of instant this no longer works.
>
> See below, instant is missing an extra -I flag for my added
> include_dirs
>
> /usr/bin/c++
> -D_instant_module_b64000edc5326b1f061009cece574086bda73d8b_EXPORTS -fPIC
> -I/usr/local/include -I/usr/include/python2.7
> -I/tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b
> -o
> CMakeFiles/_instant_module_b64000edc5326b1f061009cece574086bda73d8b.dir/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx.o
> -c
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx
>
> /tmp/tmp6Uu1ly2013-2-26-12-08_instant/instant_module_b64000edc5326b1f061009cece574086bda73d8b/instant_module_b64000edc5326b1f061009cece574086bda73d8bPYTHON_wrap.cxx:3103:25:
> fatal error: fermi_dirac.h: No such file or directory
> compilation terminated.
>
> To manage notifications about this bug go to:
> https://bugs.launchpad.net/instant/+bug/1134634/+subscriptions
>

Kent-Andre Mardal (kent-and)
Changed in instant:
status: In Progress → Fix Committed
Johannes Ring (johannr)
Changed in instant:
status: Fix Committed → Fix Released
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